InitializeActiveEdges.h

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//  PURPOSE.  See the above copyright notice for more information.
//============================================================================
// Copyright (c) 2018, The Regents of the University of California, through
// Lawrence Berkeley National Laboratory (subject to receipt of any required approvals
// from the U.S. Dept. of Energy).  All rights reserved.
//
// Redistribution and use in source and binary forms, with or without modification,
// are permitted provided that the following conditions are met:
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//     Laboratory, U.S. Dept. of Energy nor the names of its contributors may be
//     used to endorse or promote products derived from this software without
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//=============================================================================
//
//  This code is an extension of the algorithm presented in the paper:
//  Parallel Peak Pruning for Scalable SMP Contour Tree Computation.
//  Hamish Carr, Gunther Weber, Christopher Sewell, and James Ahrens.
//  Proceedings of the IEEE Symposium on Large Data Analysis and Visualization
//  (LDAV), October 2016, Baltimore, Maryland.
//
//  The PPP2 algorithm and software were jointly developed by
//  Hamish Carr (University of Leeds), Gunther H. Weber (LBNL), and
//  Oliver Ruebel (LBNL)
//==============================================================================
 
#ifndef vtk_m_worklet_contourtree_augmented_active_graph_initialize_active_edges_h
#define vtk_m_worklet_contourtree_augmented_active_graph_initialize_active_edges_h
 
#include <vtkm/exec/arg/BasicArg.h>
#include <vtkm/filter/scalar_topology/worklet/contourtree_augmented/Types.h>
#include <vtkm/worklet/WorkletMapField.h>
 
namespace vtkm
{
namespace worklet
{
namespace contourtree_augmented
{
namespace active_graph_inc
{
 
 
// Worklet for computing the sort indices from the sort order
template <class MeshClassType>
class InitializeActiveEdges : public vtkm::worklet::WorkletMapField
{
public:
  //struct _10 : vtkm::exec::arg::BasicArg<10> {  };
  //struct _11 : vtkm::exec::arg::BasicArg<11> {  };
 
  typedef void ControlSignature(
    FieldIn outdegree,               // (input) outdegree
    ExecObject meshStructure,        // (input) execution object with the mesh structure
    FieldIn firstEdge,               // (input)
    FieldIn globalIndex,             // (input) ActiveGraph.GlobalIndex
    WholeArrayIn extrema,            // (input)
    WholeArrayIn neighbourhoodMasks, // (input)
    WholeArrayOut edgeNear,          // (output) edgeNear
    WholeArrayOut edgeFar,           // (output) edgeFar
    WholeArrayOut activeEdges);      // (output) activeEdges
  typedef void ExecutionSignature(_1, InputIndex, _2, _3, _4, _5, _6, _7, _8, _9);
 
  using InputDomain = _1;
 
  // Default Constructor
  VTKM_EXEC_CONT
  InitializeActiveEdges() {}
 
  template <typename MeshStructureType, typename InFieldPortalType, typename OutFieldPortalType>
  VTKM_EXEC void operator()(const vtkm::Id& outdegree,
                            const vtkm::Id activeIndex,
                            const MeshStructureType& meshStructure,
                            const vtkm::Id& firstEdgeIndex,
                            const vtkm::Id& sortIndex, // = GlobalIndex.Get(activeIndex)
                            const InFieldPortalType& extrema,
                            const InFieldPortalType& neighbourhoodMasks,
                            const OutFieldPortalType& edgeNear,
                            const OutFieldPortalType& edgeFar,
                            const OutFieldPortalType& activeEdges) const
  {
    if (outdegree != 0)
    {
      // temporary array for storing edges
      vtkm::Id neigbourComponents[MeshClassType::MAX_OUTDEGREE];
      int currNbrNo = 0;
      for (vtkm::Id nbrNo = 0; nbrNo < meshStructure.GetMaxNumberOfNeighbours(); ++nbrNo)
        if (neighbourhoodMasks.Get(sortIndex) & (static_cast<vtkm::Id>(1) << nbrNo))
        {
          neigbourComponents[currNbrNo++] = meshStructure.GetNeighbourIndex(sortIndex, nbrNo);
        }
 
 
      // arcs stores the ID from the join tree - i.e. the chain extremum
      //              we cannot store the correct ID yet, because it may not have been assigned yet
      //              in serial, we could hack around this by processing the vertices in a given order
      //              but in parallel we can't, so we have two stages:
      //                      in this stage, we store the join tree ID (after suppressing flags)
      //                      in a later stage, we convert it to an active graph ID
      // firstEdge / outdegree / edgeNear / edgeFar are straightforward
      // as with earlier versions, the parallel equivalent will need to use stream compression
      // but the serial version can be expressed more simply.
 
      for (vtkm::Id edge = 0; edge < outdegree; edge++)
      { // per edge
        // compute the edge index in the edge arrays
        vtkm::Id edgeID = firstEdgeIndex + edge;
 
        // now set the low and high ends
        edgeNear.Set(edgeID, activeIndex);
        edgeFar.Set(edgeID, MaskedIndex(extrema.Get(neigbourComponents[edge])));
 
        // and save the edge itself
        activeEdges.Set(edgeID, edgeID);
      } // per edge
    }
 
    // This operator implements the following loop from the serial code
    /*for (indexType activeIndex = 0; activeIndex < nCriticalPoints; ++activeIndex)
      {
        indexType outdegree = outdegree[activeIndex];
        if (outdegree != 0)
          {
            indexType sortIndex = globalIndex[activeIndex];
 
            // temporary array for storing edges
            indexType neigbourComponents[Mesh::MAX_OUTDEGREE];
            int currNbrNo = 0;
            for (vtkm::Int32 nbrNo = 0; nbrNo < mesh.GetMaxNumberOfNeighbours(); ++nbrNo)
              if (neighbourhoodMasks[sortIndex] & 1 << nbrNo)
                {
                   neigbourComponents[currNbrNo++] = mesh.GetNeighbourIndex(sortIndex, nbrNo);
                }
 
 
            // arcs stores the ID from the join tree - i.e. the chain extremum
            //              we cannot store the correct ID yet, because it may not have been assigned yet
            //              in serial, we could hack around this by processing the vertices in a given order
            //              but in parallel we can't, so we have two stages:
            //                      in this stage, we store the join tree ID (after suppressing flags)
            //                      in a later stage, we convert it to an active graph ID
            // firstEdge / outdegree / edgeNear / edgeFar are straightforward
            // as with earlier versions, the parallel equivalent will need to use stream compression
            // but the serial version can be expressed more simply.
 
            for (indexType edge = 0; edge < outdegree; edge++)
              { // per edge
                // compute the edge index in the edge arrays
                indexType edgeID = firstEdge[activeIndex] + edge;
 
                // now set the low and high ends
                edgeNear[edgeID] = activeIndex;
                edgeFar[edgeID] = MaskedIndex(extrema[neigbourComponents[edge]]);
 
                // and save the edge itself
                activeEdges[edgeID] = edgeID;
              } // per edge
          }
        } // per activeIndex*/
  }
}; // Mesh2D_DEM_VertexStarter
 
 
} // namespace mesh_dem_triangulation_worklets
} // namespace contourtree_augmented
} // namespace worklet
} // namespace vtkm
 
#endif